Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QR565_RS09105 Genome accession   NZ_CP127387
Coordinates   1956660..1956989 (+) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 101901100740-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951660..1961989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR565_RS09090 - 1952275..1953237 (+) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -
  QR565_RS09095 - 1953237..1954274 (+) 1038 WP_003452706.1 MraY family glycosyltransferase -
  QR565_RS09100 - 1954472..1956469 (+) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  QR565_RS09105 comEA/comE1 1956660..1956989 (+) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  QR565_RS09115 - 1957206..1958402 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  QR565_RS09120 uvrB 1958590..1960602 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=772572 QR565_RS09105 WP_023109812.1 1956660..1956989(+) (comEA/comE1) [Pseudomonas aeruginosa strain 101901100740-1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=772572 QR565_RS09105 WP_023109812.1 1956660..1956989(+) (comEA/comE1) [Pseudomonas aeruginosa strain 101901100740-1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385