Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QR565_RS06720 Genome accession   NZ_CP127387
Coordinates   1444092..1445096 (+) Length   334 a.a.
NCBI ID   WP_003143264.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 101901100740-1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439092..1450096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR565_RS06690 fghA 1439184..1440035 (+) 852 WP_003113869.1 S-formylglutathione hydrolase -
  QR565_RS06695 ispF 1440106..1440579 (+) 474 WP_003098560.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QR565_RS06700 truD 1440576..1441643 (+) 1068 WP_033937525.1 tRNA pseudouridine(13) synthase TruD -
  QR565_RS06705 surE 1441631..1442380 (+) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  QR565_RS06710 - 1442413..1443048 (+) 636 WP_003098558.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  QR565_RS06715 - 1443094..1443987 (+) 894 WP_017148388.1 peptidoglycan DD-metalloendopeptidase family protein -
  QR565_RS06720 rpoS 1444092..1445096 (+) 1005 WP_003143264.1 RNA polymerase sigma factor RpoS Regulator
  QR565_RS06725 fdxA 1445523..1445846 (-) 324 WP_003092272.1 ferredoxin FdxA -
  QR565_RS06730 mutS 1445913..1448480 (-) 2568 WP_003113873.1 DNA mismatch repair protein MutS -
  QR565_RS06735 - 1448606..1449613 (-) 1008 WP_003098486.1 TolB family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38254.43 Da        Isoelectric Point: 5.0507

>NTDB_id=772567 QR565_RS06720 WP_003143264.1 1444092..1445096(+) (rpoS) [Pseudomonas aeruginosa strain 101901100740-1]
MALKKEGPEFDRDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=772567 QR565_RS06720 WP_003143264.1 1444092..1445096(+) (rpoS) [Pseudomonas aeruginosa strain 101901100740-1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCGCGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.381

83.234

0.611