Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QR565_RS02050 Genome accession   NZ_CP127387
Coordinates   436348..436713 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 101901100740-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431348..441713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR565_RS02020 pyrR 431970..432482 (-) 513 WP_180710537.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  QR565_RS02025 ruvX 432594..433028 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  QR565_RS02030 - 433028..433597 (-) 570 WP_410525187.1 YqgE/AlgH family protein -
  QR565_RS02035 - 433646..434539 (-) 894 WP_023518289.1 energy transducer TonB -
  QR565_RS02040 gshB 434686..435639 (-) 954 WP_023518290.1 glutathione synthase -
  QR565_RS02045 pilG 435894..436301 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  QR565_RS02050 pilH 436348..436713 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  QR565_RS02055 - 436764..437300 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  QR565_RS02060 pilJ 437385..439433 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  QR565_RS02065 pilK 439494..440369 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=772555 QR565_RS02050 WP_003084587.1 436348..436713(+) (pilH) [Pseudomonas aeruginosa strain 101901100740-1]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=772555 QR565_RS02050 WP_003084587.1 436348..436713(+) (pilH) [Pseudomonas aeruginosa strain 101901100740-1]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364