Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QRA10_RS22870 Genome accession   NZ_CP127342
Coordinates   4977131..4978156 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain 18C53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4972131..4983156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA10_RS22845 (QRA10_22815) - 4972321..4972638 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  QRA10_RS22850 (QRA10_22820) trkA 4972786..4974159 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  QRA10_RS22855 (QRA10_22825) rsmB 4974186..4975490 (-) 1305 WP_003114643.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QRA10_RS22860 (QRA10_22830) fmt 4975487..4976431 (-) 945 WP_010793609.1 methionyl-tRNA formyltransferase -
  QRA10_RS22865 (QRA10_22835) def 4976486..4976992 (-) 507 WP_003107059.1 peptide deformylase -
  QRA10_RS22870 (QRA10_22840) tsaP 4977131..4978156 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QRA10_RS22875 (QRA10_22845) dprA 4978291..4979379 (+) 1089 WP_014602326.1 DNA-processing protein DprA Machinery gene
  QRA10_RS22880 (QRA10_22850) - 4979420..4979977 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  QRA10_RS22885 (QRA10_22855) - 4979987..4980964 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  QRA10_RS22890 (QRA10_22860) hemF 4981155..4982072 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  QRA10_RS22895 (QRA10_22865) aroE 4982130..4982954 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=772440 QRA10_RS22870 WP_003097294.1 4977131..4978156(+) (tsaP) [Pseudomonas aeruginosa strain 18C53]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=772440 QRA10_RS22870 WP_003097294.1 4977131..4978156(+) (tsaP) [Pseudomonas aeruginosa strain 18C53]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393