Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   PDI59_RS07560 Genome accession   NZ_CP115478
Coordinates   1521164..1522234 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HP20814-062     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516164..1527234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI59_RS07515 (PDI59_07520) gcvT 1516188..1517237 (-) 1050 WP_190362429.1 glycine cleavage system aminomethyltransferase GcvT -
  PDI59_RS07520 (PDI59_07525) - 1517219..1517293 (-) 75 Protein_1478 hypothetical protein -
  PDI59_RS07525 (PDI59_07530) - 1517296..1518615 (-) 1320 Protein_1479 ISL3-like element IS1181 family transposase -
  PDI59_RS07530 (PDI59_07535) - 1518958..1519481 (-) 524 Protein_1480 shikimate kinase -
  PDI59_RS07535 (PDI59_07540) - 1519471..1519617 (-) 147 WP_001792109.1 hypothetical protein -
  PDI59_RS07540 (PDI59_07545) comGF 1519714..1520211 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  PDI59_RS07545 (PDI59_07550) comGE 1520129..1520428 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  PDI59_RS07550 (PDI59_07555) comGD 1520415..1520861 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  PDI59_RS07555 (PDI59_07560) comGC 1520839..1521150 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  PDI59_RS07560 (PDI59_07565) comGB 1521164..1522234 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  PDI59_RS07565 (PDI59_07570) comGA 1522206..1523180 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  PDI59_RS07570 (PDI59_07575) - 1523232..1523855 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  PDI59_RS07575 (PDI59_07580) - 1523852..1524181 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  PDI59_RS07580 (PDI59_07585) - 1524181..1525167 (-) 987 WP_000161311.1 ROK family glucokinase -
  PDI59_RS07585 (PDI59_07590) - 1525164..1525367 (-) 204 WP_000087561.1 YqgQ family protein -
  PDI59_RS07590 (PDI59_07595) - 1525348..1526811 (-) 1464 WP_001017852.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=772437 PDI59_RS07560 WP_000776422.1 1521164..1522234(-) (comGB) [Staphylococcus aureus strain HP20814-062]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=772437 PDI59_RS07560 WP_000776422.1 1521164..1522234(-) (comGB) [Staphylococcus aureus strain HP20814-062]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1