Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   PDI55_RS10125 Genome accession   NZ_CP115477
Coordinates   2041882..2042925 (-) Length   347 a.a.
NCBI ID   WP_190281393.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HP20814-043     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2036882..2047925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI55_RS10095 (PDI55_10095) - 2037303..2038559 (-) 1257 WP_001795108.1 aminopeptidase -
  PDI55_RS10100 (PDI55_10100) - 2038562..2038762 (-) 201 WP_000180460.1 DUF1128 family protein -
  PDI55_RS10105 (PDI55_10105) - 2038909..2039373 (+) 465 WP_000228666.1 low molecular weight protein-tyrosine-phosphatase -
  PDI55_RS10110 (PDI55_10110) - 2039380..2039655 (+) 276 WP_000428172.1 YtxH domain-containing protein -
  PDI55_RS10115 (PDI55_10115) - 2039933..2041150 (+) 1218 WP_000037075.1 YihY/virulence factor BrkB family protein -
  PDI55_RS10120 (PDI55_10120) vraR 2041263..2041892 (-) 630 WP_000153535.1 two-component system response regulator VraR Regulator
  PDI55_RS10125 (PDI55_10125) vraS 2041882..2042925 (-) 1044 WP_190281393.1 sensor histidine kinase Regulator
  PDI55_RS10130 (PDI55_10130) liaF 2042922..2043623 (-) 702 WP_000149064.1 cell wall-active antibiotics response protein LiaF -
  PDI55_RS10135 (PDI55_10135) - 2043638..2044024 (-) 387 WP_001110179.1 hypothetical protein -
  PDI55_RS10140 (PDI55_10140) map 2044241..2044999 (-) 759 WP_000636142.1 type I methionyl aminopeptidase -
  PDI55_RS10145 (PDI55_10145) - 2045471..2046457 (+) 987 WP_000999717.1 aromatic acid exporter family protein -
  PDI55_RS10150 (PDI55_10150) - 2046888..2047301 (-) 414 WP_001557448.1 hypothetical protein -
  PDI55_RS10155 (PDI55_10155) - 2047330..2047440 (-) 111 WP_001790257.1 hypothetical protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 40070.55 Da        Isoelectric Point: 5.8951

>NTDB_id=772411 PDI55_RS10125 WP_190281393.1 2041882..2042925(-) (vraS) [Staphylococcus aureus strain HP20814-043]
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKT
QIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRYSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDSYDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=772411 PDI55_RS10125 WP_190281393.1 2041882..2042925(-) (vraS) [Staphylococcus aureus strain HP20814-043]
ATGAACCACTACATTAGAACAATTGGTTCAATGCTCATCTTAGTATATAGCATGCTAGCTGCATTTCTATTCATCGATAA
AGTTTTTGTAAATATCATCTATTTTCAAGGTATGTTTTATACACAAATATTCGGAATACCAGTCTTTTTATTTTTAAATC
TCATCATCATATTATTGTGTATTATTGTTGGTTCGGTACTCGCATACAAAATCAATCAGCAAAATGATTGGATTAAGACG
CAAATTGAGCGTTCAATGGAAGGCGAAACAGTTGGCATTAATGATCAAAATATAGAAATATATAGTGAAACGTTAGATTT
ATACCATACACTCGTACCTTTAAATCAAGAATTGCATAAGTTGCGACTTAAAACTCAAAACTTAACCAATGAAAATTATA
ATATTAATGATGTGAAAGTTAAAAAGATTATTGAAGATGAACGTCAAAGACTAGCTCGAGAACTTCACGATTCTGTTAGT
CAGCAACTTTTTGCGGCAAGTATGATGCTTTCTGCTATCAAAGAAACGAAGTTAGAACCACCATTAGACCAACAAATTCC
GATTTTAGAGAAAATGGTTCAAGATTCGCAGTTAGAAATGCGTGCTTTGCTGTTACATTTAAGACCGCTTGGTTTAAAAG
ACAAATCTTTAGGTGAGGGTATTAAAGATTTAGTTATTGATTTACAAAAAAAAGTGCCAATGAAAGTTGTGCATGAAATA
CAAGATTTTAAAGTGCCTAAAGGTATTGAAGATCATTTGTTCAGAATTACACAGGAAGCAATTTCGAATACATTGCGTTA
TTCAAACGGTACAAAAGTGACAGTAGAATTGTTTAATAAAGACGATTATTTATTGTTGAGAATTCAAGATAATGGTAAAG
GTTTTAATGTTGATGAAAAATTAGAACAAAGTTATGGACTTAAAAATATGCGTGAAAGAGCTTTGGAAATTGGTGCAACG
TTCCATATTGTATCATTGCCAGATTCAGGTACACGTATCGAGGTGAAAGCACCTTTAAATAAGGAGGATTCGTATGACGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

99.712

100

0.997