Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   PDI57_RS05130 Genome accession   NZ_CP115476
Coordinates   1039169..1040155 (+) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus aureus strain HP20814-006     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context


Location: 1034169..1045155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI57_RS05105 (PDI57_05105) opp4B 1034383..1035345 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  PDI57_RS05110 (PDI57_05110) opp4C 1035357..1036238 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  PDI57_RS05115 (PDI57_05115) trpS 1036280..1037269 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  PDI57_RS05120 (PDI57_05120) spxA 1037563..1037958 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  PDI57_RS05125 (PDI57_05125) mecA 1038329..1039048 (+) 720 WP_001217728.1 adaptor protein MecA -
  PDI57_RS05130 (PDI57_05130) coiA 1039169..1040155 (+) 987 WP_000959282.1 competence protein CoiA family protein Machinery gene
  PDI57_RS05135 (PDI57_05135) pepF 1040203..1042011 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  PDI57_RS05140 (PDI57_05140) yjbH 1042471..1043277 (-) 807 WP_190281330.1 protease adaptor protein YjbH -
  PDI57_RS05145 (PDI57_05145) - 1043300..1043665 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  PDI57_RS05150 (PDI57_05150) - 1043769..1044362 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  PDI57_RS05155 (PDI57_05155) - 1044548..1044895 (+) 348 WP_001242103.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=772346 PDI57_RS05130 WP_000959282.1 1039169..1040155(+) (coiA) [Staphylococcus aureus strain HP20814-006]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=772346 PDI57_RS05130 WP_000959282.1 1039169..1040155(+) (coiA) [Staphylococcus aureus strain HP20814-006]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1

  coiA Staphylococcus aureus MW2

97.561

100

0.976