Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QRX37_RS03045 Genome accession   NZ_CP127324
Coordinates   635219..635824 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 980-2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 630219..640824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX37_RS03015 (QRX37_03015) rsmS 630924..631085 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QRX37_RS03020 (QRX37_03020) priC 631099..631626 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  QRX37_RS03025 (QRX37_03025) ybaN 631696..632073 (+) 378 WP_001188905.1 DUF454 family protein -
  QRX37_RS03030 (QRX37_03030) apt 632226..632777 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QRX37_RS03035 (QRX37_03035) dnaX 632906..634837 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QRX37_RS03040 (QRX37_03040) ybaB 634890..635219 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QRX37_RS03045 (QRX37_03045) recR 635219..635824 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QRX37_RS03050 (QRX37_03050) htpG 635934..637808 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  QRX37_RS03055 (QRX37_03055) adk 637989..638633 (+) 645 WP_001313630.1 adenylate kinase -
  QRX37_RS03060 (QRX37_03060) hemH 638765..639727 (+) 963 WP_001250114.1 ferrochelatase -
  QRX37_RS03065 (QRX37_03065) aes 639724..640683 (-) 960 WP_000801816.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=772284 QRX37_RS03045 WP_001195025.1 635219..635824(+) (recR) [Escherichia coli strain 980-2]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=772284 QRX37_RS03045 WP_001195025.1 635219..635824(+) (recR) [Escherichia coli strain 980-2]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443