Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QRM71_RS23470 Genome accession   NZ_CP127316
Coordinates   4825384..4825989 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain Ch1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4820384..4830989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRM71_RS23440 (QRM71_23440) rsmS 4821086..4821250 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  QRM71_RS23445 (QRM71_23445) priC 4821264..4821791 (-) 528 WP_001522038.1 primosomal replication protein N'' -
  QRM71_RS23450 (QRM71_23450) ybaN 4821861..4822238 (+) 378 WP_001188905.1 DUF454 family protein -
  QRM71_RS23455 (QRM71_23455) apt 4822391..4822942 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QRM71_RS23460 (QRM71_23460) dnaX 4823071..4825002 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QRM71_RS23465 (QRM71_23465) ybaB 4825055..4825384 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QRM71_RS23470 (QRM71_23470) recR 4825384..4825989 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QRM71_RS23475 (QRM71_23475) htpG 4826099..4827973 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  QRM71_RS23480 (QRM71_23480) adk 4828154..4828798 (+) 645 WP_001220233.1 adenylate kinase -
  QRM71_RS23485 (QRM71_23485) hemH 4828930..4829892 (+) 963 WP_285978825.1 ferrochelatase -
  QRM71_RS23490 (QRM71_23490) aes 4829889..4830848 (-) 960 WP_000764314.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=772270 QRM71_RS23470 WP_001195025.1 4825384..4825989(+) (recR) [Escherichia coli strain Ch1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=772270 QRM71_RS23470 WP_001195025.1 4825384..4825989(+) (recR) [Escherichia coli strain Ch1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443