Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PDI54_RS10345 Genome accession   NZ_CP115472
Coordinates   2095079..2095780 (+) Length   233 a.a.
NCBI ID   WP_290216125.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AF4001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2095870..2097189 2095079..2095780 flank 90


Gene organization within MGE regions


Location: 2095079..2097189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI54_RS10345 (PDI54_10345) agrA 2095079..2095780 (+) 702 WP_290216125.1 quorum-sensing response regulator AgrA Regulator
  PDI54_RS10350 (PDI54_10350) - 2095870..2097189 (+) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 27157.96 Da        Isoelectric Point: 5.3768

>NTDB_id=772239 PDI54_RS10345 WP_290216125.1 2095079..2095780(+) (agrA) [Staphylococcus aureus strain AF4001]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNGSSSFMVGR

Nucleotide


Download         Length: 702 bp        

>NTDB_id=772239 PDI54_RS10345 WP_290216125.1 2095079..2095780(+) (agrA) [Staphylococcus aureus strain AF4001]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATGGTTCTTCATCTTTTATGGTGGGAAGGTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-233)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

96.567

100

0.966