Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QRM71_RS12620 Genome accession   NZ_CP127316
Coordinates   2534733..2535971 (+) Length   412 a.a.
NCBI ID   WP_021561377.1    Uniprot ID   -
Organism   Escherichia coli strain Ch1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2529733..2540971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRM71_RS12605 (QRM71_12600) - 2530247..2531923 (+) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -
  QRM71_RS12610 (QRM71_12605) kdsB 2531933..2532673 (+) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QRM71_RS12615 (QRM71_12610) - 2532670..2534698 (+) 2029 Protein_2473 capsular polysaccharide biosynthesis protein -
  QRM71_RS12620 (QRM71_12615) kpsS 2534733..2535971 (+) 1239 WP_021561377.1 capsular biosynthesis protein Regulator
  QRM71_RS12625 (QRM71_12620) - 2536092..2536691 (-) 600 WP_021561378.1 hypothetical protein -
  QRM71_RS12630 (QRM71_12625) - 2536821..2540273 (-) 3453 WP_285978912.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 49097.62 Da        Isoelectric Point: 9.9743

>NTDB_id=772223 QRM71_RS12620 WP_021561377.1 2534733..2535971(+) (kpsS) [Escherichia coli strain Ch1]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGEWMFEHEIKV
DTETNVISSSRL

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=772223 QRM71_RS12620 WP_021561377.1 2534733..2535971(+) (kpsS) [Escherichia coli strain Ch1]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATGGGGAGTGGATGTTTGAACATGAAATTAAGGTA
GATACGGAAACCAATGTTATCTCAAGTTCGCGCCTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.241

95.874

0.376