Detailed information NTG0772218

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QRM71_RS10980
• Genome accession: NZ_CP127316
• Coordinates: 2197598..2198590 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ch1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2192598..2203590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRM71_RS10955 (QRM71_10955)	ygbN	2193253..2194617 (+)	1365	WP_000104455.1	GntP family transporter	-
QRM71_RS10960 (QRM71_10960)	-	2194656..2194892 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QRM71_RS10965 (QRM71_10965)	-	2194903..2196330 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QRM71_RS10970 (QRM71_10970)	-	2196330..2196923 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QRM71_RS10975 (QRM71_10975)	-	2197070..2197477 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
QRM71_RS10980 (QRM71_10980)	rpoS	2197598..2198590 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QRM71_RS10985 (QRM71_10985)	nlpD	2198653..2199747 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QRM71_RS10990 (QRM71_10990)	pcm	2199932..2200558 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QRM71_RS10995 (QRM71_10995)	surE	2200552..2201313 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QRM71_RS11000 (QRM71_11000)	truD	2201294..2202343 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QRM71_RS11005 (QRM71_11005)	ispF	2202340..2202819 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QRM71_RS11010 (QRM71_11010)	ispD	2202819..2203528 (-)	710	Protein_2160	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=772218 QRM71_RS10980 WP_000081550.1 2197598..2198590(-) (rpoS) [Escherichia coli strain Ch1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=772218 QRM71_RS10980 WP_000081550.1 2197598..2198590(-) (rpoS) [Escherichia coli strain Ch1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715