Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QRM71_RS00565 Genome accession   NZ_CP127316
Coordinates   113082..113711 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Ch1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 108082..118711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRM71_RS00545 (QRM71_00545) ycbZ 108472..110232 (-) 1761 WP_045145322.1 Lon protease family protein -
  QRM71_RS00550 (QRM71_00550) matP 110418..110870 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QRM71_RS00555 (QRM71_00555) ompA 110945..111997 (-) 1053 WP_000750418.1 porin OmpA -
  QRM71_RS00560 (QRM71_00560) sulA 112354..112863 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  QRM71_RS00565 (QRM71_00565) sxy/tfoX 113082..113711 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QRM71_RS00570 (QRM71_00570) yccS 113674..115836 (-) 2163 WP_001550920.1 YccS family putative transporter -
  QRM71_RS00575 (QRM71_00575) yccF 115846..116292 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QRM71_RS00580 (QRM71_00580) helD 116415..118469 (+) 2055 WP_001595613.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=772192 QRM71_RS00565 WP_000839153.1 113082..113711(+) (sxy/tfoX) [Escherichia coli strain Ch1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=772192 QRM71_RS00565 WP_000839153.1 113082..113711(+) (sxy/tfoX) [Escherichia coli strain Ch1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1