Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   O5I81_RS07945 Genome accession   NZ_CP115463
Coordinates   1624252..1625619 (-) Length   455 a.a.
NCBI ID   WP_271068409.1    Uniprot ID   -
Organism   Caulobacter sp. NIBR1757     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1619252..1630619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5I81_RS07925 (AMEJIAPC_01579) - 1620124..1620525 (+) 402 WP_271068405.1 response regulator -
  O5I81_RS07930 (AMEJIAPC_01580) - 1620593..1622077 (-) 1485 WP_271068406.1 PAS domain-containing protein -
  O5I81_RS07935 (AMEJIAPC_01581) purF 1622181..1623671 (-) 1491 WP_271068407.1 amidophosphoribosyltransferase -
  O5I81_RS07940 (AMEJIAPC_01582) - 1623668..1624255 (-) 588 WP_271068408.1 CvpA family protein -
  O5I81_RS07945 (AMEJIAPC_01583) radA 1624252..1625619 (-) 1368 WP_271068409.1 DNA repair protein RadA Machinery gene
  O5I81_RS07950 (AMEJIAPC_01584) - 1625880..1627925 (+) 2046 WP_271068410.1 PAS domain-containing sensor histidine kinase -
  O5I81_RS07955 (AMEJIAPC_01585) alr 1627934..1628992 (-) 1059 WP_271068411.1 alanine racemase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47356.07 Da        Isoelectric Point: 6.1709

>NTDB_id=772184 O5I81_RS07945 WP_271068409.1 1624252..1625619(-) (radA) [Caulobacter sp. NIBR1757]
MARDGALYVCQSCGGVSPKWQGQCPACGTWNSLVEELTSKLPGALAPSKSARRGGLVFEGLESDTPSPPRIITGVDEFDR
VCGGGVVPGSAILVGGDPGVGKSTLLLQVVAQASLRGARCAYISGEEAVEQVRGRAGRMGLAQAPVKLAAETSLRDILEG
LKKEPFDLVVIDSIQTMWSDAHEAGPGSVTQVRSCAQELVRFAKKKGVAVILVGHVTKDGQIAGPRVVEHLVDAVLSFEG
ERGYPFRVLRGAKNRFGATDEIGVFEMGDIGLSEVKNPSALFLHDGAERSAGAAVFAGIEGSRPVLVEFQALVAPSSGGN
PRRAVVGWDSGRLAMVLAVLESRCGLGFGNRDVYLNVAGGLRISEPAADLAAAAALASSALDEPLPQDCVVFGEISLSGD
VRPVGRMESRLKEAAKLGFGRALAPNGAGDSLPVTGVSRLAEAIDRIGQQRWTTP

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=772184 O5I81_RS07945 WP_271068409.1 1624252..1625619(-) (radA) [Caulobacter sp. NIBR1757]
ATGGCCCGCGACGGCGCCCTTTATGTCTGCCAGTCCTGCGGTGGGGTTTCGCCCAAGTGGCAGGGGCAGTGCCCGGCCTG
TGGGACCTGGAACAGTCTGGTCGAGGAGCTGACCAGCAAACTGCCGGGGGCGCTGGCGCCGTCGAAGAGCGCCCGTCGGG
GCGGTCTGGTCTTCGAGGGGCTGGAAAGCGACACCCCCTCCCCGCCCAGGATCATCACCGGCGTCGATGAGTTCGACCGG
GTGTGCGGCGGCGGCGTGGTGCCGGGATCGGCCATCCTGGTCGGCGGCGATCCGGGGGTGGGGAAATCGACGCTGCTGCT
GCAGGTGGTGGCCCAGGCTTCCCTGAGGGGGGCGCGGTGCGCCTACATCTCCGGCGAAGAGGCCGTCGAACAGGTGCGCG
GCCGGGCCGGGCGGATGGGGCTGGCCCAGGCGCCGGTCAAGCTGGCGGCCGAGACCTCGCTGCGGGACATCCTCGAGGGC
CTGAAGAAGGAGCCGTTCGACCTCGTGGTCATCGATTCCATCCAGACCATGTGGTCCGACGCCCATGAGGCGGGGCCCGG
TTCGGTGACCCAGGTACGATCCTGCGCCCAGGAACTGGTGCGGTTCGCCAAGAAGAAGGGGGTGGCGGTCATCCTGGTCG
GCCACGTCACCAAGGACGGCCAGATCGCCGGGCCGCGGGTGGTCGAGCATCTGGTCGATGCGGTGCTCAGCTTCGAGGGC
GAGCGCGGCTATCCCTTCCGCGTGCTGCGCGGGGCCAAGAACCGCTTCGGGGCGACCGACGAGATCGGCGTCTTCGAGAT
GGGCGACATCGGCCTGAGCGAGGTGAAGAACCCCTCGGCGCTGTTCCTGCACGACGGGGCCGAGCGCTCGGCCGGGGCGG
CGGTGTTCGCCGGCATCGAGGGCAGTCGACCTGTGCTGGTCGAATTCCAGGCCCTGGTGGCCCCCAGTTCGGGCGGCAAT
CCGCGCCGGGCGGTGGTCGGATGGGATTCCGGGCGCCTGGCCATGGTGCTTGCCGTGCTTGAGTCGCGATGCGGCCTTGG
TTTTGGCAACCGGGACGTCTATCTGAACGTCGCCGGGGGGCTGAGGATCAGCGAACCGGCGGCCGACCTGGCCGCGGCCG
CGGCCTTGGCCTCCTCCGCACTGGATGAACCCCTGCCGCAGGACTGCGTGGTGTTTGGCGAAATCAGCCTTTCCGGCGAC
GTGAGGCCCGTGGGCCGCATGGAATCACGCCTGAAGGAAGCGGCCAAGCTGGGCTTCGGCCGCGCCCTGGCCCCGAACGG
GGCCGGCGACTCCCTGCCCGTCACCGGCGTGTCGCGGCTGGCTGAGGCCATCGACCGCATCGGCCAGCAGAGATGGACCA
CCCCTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-426)

AAA domain (AAA_25)

(85-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.478

100

0.49
  radA Streptococcus pneumoniae Rx1

45.815

99.78

0.457
  radA Streptococcus pneumoniae D39

45.815

99.78

0.457
  radA Streptococcus pneumoniae R6

45.815

99.78

0.457
  radA Streptococcus pneumoniae TIGR4

45.815

99.78

0.457
  radA Streptococcus mitis NCTC 12261

45.154

99.78

0.451
  radA Streptococcus mitis SK321

45.154

99.78

0.451