Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QRM69_RS19985 Genome accession   NZ_CP127314
Coordinates   4113727..4114332 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain C25     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4108727..4119332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRM69_RS19965 (QRM69_19965) aes 4108869..4109828 (+) 960 WP_000801819.1 acetyl esterase -
  QRM69_RS19970 (QRM69_19970) hemH 4109825..4110787 (-) 963 WP_001250114.1 ferrochelatase -
  QRM69_RS19975 (QRM69_19975) adk 4110919..4111563 (-) 645 WP_001313630.1 adenylate kinase -
  QRM69_RS19980 (QRM69_19980) htpG 4111743..4113617 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QRM69_RS19985 (QRM69_19985) recR 4113727..4114332 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QRM69_RS19990 (QRM69_19990) ybaB 4114332..4114661 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QRM69_RS19995 (QRM69_19995) dnaX 4114714..4116645 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  QRM69_RS20000 (QRM69_20000) apt 4116774..4117325 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QRM69_RS20005 (QRM69_20005) ybaN 4117478..4117855 (-) 378 WP_001188900.1 DUF454 family protein -
  QRM69_RS20010 (QRM69_20010) priC 4117925..4118452 (+) 528 WP_000858961.1 primosomal replication protein N'' -
  QRM69_RS20015 (QRM69_20015) rsmS 4118466..4118627 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QRM69_RS20020 (QRM69_20020) - 4118680..4118778 (-) 99 Protein_3916 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=772175 QRM69_RS19985 WP_001195025.1 4113727..4114332(-) (recR) [Escherichia coli strain C25]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=772175 QRM69_RS19985 WP_001195025.1 4113727..4114332(-) (recR) [Escherichia coli strain C25]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443