Detailed information NTG0772144

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QRM69_RS07400
• Genome accession: NZ_CP127314
• Coordinates: 1543499..1544491 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C25
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1538499..1549491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRM69_RS07370 (QRM69_07370)	ispD	1538560..1539270 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QRM69_RS07375 (QRM69_07375)	ispF	1539270..1539749 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QRM69_RS07380 (QRM69_07380)	truD	1539746..1540795 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
QRM69_RS07385 (QRM69_07385)	surE	1540776..1541537 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QRM69_RS07390 (QRM69_07390)	pcm	1541531..1542157 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
QRM69_RS07395 (QRM69_07395)	nlpD	1542342..1543436 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
QRM69_RS07400 (QRM69_07400)	rpoS	1543499..1544491 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QRM69_RS07405 (QRM69_07405)	-	1544669..1545220 (-)	552	WP_001179443.1	flavodoxin family protein	-
QRM69_RS07410 (QRM69_07410)	-	1545445..1546488 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
QRM69_RS07415 (QRM69_07415)	ygbN	1546631..1547995 (-)	1365	WP_000104433.1	GntP family transporter	-
QRM69_RS07420 (QRM69_07420)	ygbM	1548084..1548860 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=772144 QRM69_RS07400 WP_000081550.1 1543499..1544491(+) (rpoS) [Escherichia coli strain C25]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=772144 QRM69_RS07400 WP_000081550.1 1543499..1544491(+) (rpoS) [Escherichia coli strain C25]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715