Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IDSSA_RS04235 Genome accession   NZ_AP025249
Coordinates   862256..863338 (+) Length   360 a.a.
NCBI ID   WP_001548033.1    Uniprot ID   A0A0H2XJ41
Organism   Staphylococcus aureus strain IDSA1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 857256..868338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDSSA_RS04215 (IDSSA_0108200) - 857628..858698 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  IDSSA_RS04220 (IDSSA_0108210) - 859016..860071 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  IDSSA_RS04225 (IDSSA_0108220) - 860241..860882 (-) 642 WP_000192947.1 YigZ family protein -
  IDSSA_RS04230 (IDSSA_0108230) fakB1 861026..861892 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  IDSSA_RS04235 (IDSSA_0108240) comFA 862256..863338 (+) 1083 WP_001548033.1 DEAD/DEAH box helicase Machinery gene
  IDSSA_RS04240 (IDSSA_0108250) - 863331..864005 (+) 675 WP_001057967.1 ComF family protein -
  IDSSA_RS04245 (IDSSA_0108260) hpf 864066..864638 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  IDSSA_RS04250 (IDSSA_0108270) secA 865052..867583 (+) 2532 WP_000506532.1 preprotein translocase subunit SecA -
  IDSSA_RS04255 - 867625..867729 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42111.65 Da        Isoelectric Point: 9.8307

>NTDB_id=77214 IDSSA_RS04235 WP_001548033.1 862256..863338(+) (comFA) [Staphylococcus aureus strain IDSA1]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=77214 IDSSA_RS04235 WP_001548033.1 862256..863338(+) (comFA) [Staphylococcus aureus strain IDSA1]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XJ41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367

Multiple sequence alignment