Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PCS82_RS00470 Genome accession   NZ_CP115376
Coordinates   95992..96621 (+) Length   209 a.a.
NCBI ID   WP_309204848.1    Uniprot ID   -
Organism   Escherichia coli strain CUVET20-PYO4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 90992..101621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS82_RS00450 (PCS82_00445) ycbZ 91392..93152 (-) 1761 WP_000156473.1 Lon protease family protein -
  PCS82_RS00455 (PCS82_00450) matP 93338..93790 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PCS82_RS00460 (PCS82_00455) ompA 93867..94907 (-) 1041 WP_022645481.1 porin OmpA -
  PCS82_RS00465 (PCS82_00460) sulA 95264..95773 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  PCS82_RS00470 (PCS82_00465) sxy/tfoX 95992..96621 (+) 630 WP_309204848.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PCS82_RS00475 (PCS82_00470) yccS 96584..98746 (-) 2163 WP_000875041.1 YccS family putative transporter -
  PCS82_RS00480 (PCS82_00475) yccF 98756..99202 (-) 447 WP_001261235.1 YccF domain-containing protein -
  PCS82_RS00485 (PCS82_00480) helD 99325..101379 (+) 2055 WP_022645482.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24103.99 Da        Isoelectric Point: 8.9883

>NTDB_id=772053 PCS82_RS00470 WP_309204848.1 95992..96621(+) (sxy/tfoX) [Escherichia coli strain CUVET20-PYO4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGLSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=772053 PCS82_RS00470 WP_309204848.1 95992..96621(+) (sxy/tfoX) [Escherichia coli strain CUVET20-PYO4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCTATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995