Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PCS91_RS13830 Genome accession   NZ_CP115365
Coordinates   2827103..2827732 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli strain CUVET19-1426     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2822103..2832732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS91_RS13815 (PCS91_13800) helD 2822345..2824399 (-) 2055 WP_001295354.1 DNA helicase IV -
  PCS91_RS13820 (PCS91_13805) yccF 2824522..2824968 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PCS91_RS13825 (PCS91_13810) yccS 2824978..2827140 (+) 2163 WP_023281787.1 YccS family putative transporter -
  PCS91_RS13830 (PCS91_13815) sxy/tfoX 2827103..2827732 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PCS91_RS13835 (PCS91_13820) sulA 2827951..2828460 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PCS91_RS13840 (PCS91_13825) ompA 2828817..2829857 (+) 1041 WP_000750416.1 porin OmpA -
  PCS91_RS13845 (PCS91_13830) matP 2829933..2830385 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PCS91_RS13850 (PCS91_13835) ycbZ 2830571..2832331 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=772022 PCS91_RS13830 WP_000839152.1 2827103..2827732(-) (sxy/tfoX) [Escherichia coli strain CUVET19-1426]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=772022 PCS91_RS13830 WP_000839152.1 2827103..2827732(-) (sxy/tfoX) [Escherichia coli strain CUVET19-1426]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995