Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QRM68_RS22540 Genome accession   NZ_CP127303
Coordinates   4285932..4286561 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain APEC37     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4280932..4291561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRM68_RS22525 (QRM68_22525) helD 4281174..4283228 (-) 2055 WP_000420536.1 DNA helicase IV -
  QRM68_RS22530 (QRM68_22530) yccF 4283351..4283797 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QRM68_RS22535 (QRM68_22535) yccS 4283807..4285969 (+) 2163 WP_000323868.1 YccS family putative transporter -
  QRM68_RS22540 (QRM68_22540) sxy/tfoX 4285932..4286561 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QRM68_RS22545 (QRM68_22545) sulA 4286780..4287288 (+) 509 Protein_4124 SOS-induced cell division inhibitor SulA -
  QRM68_RS22550 (QRM68_22550) ompA 4287645..4288700 (+) 1056 WP_000750414.1 porin OmpA -
  QRM68_RS22555 (QRM68_22555) matP 4288778..4289230 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QRM68_RS22560 (QRM68_22560) ycbZ 4289416..4291176 (+) 1761 WP_021556661.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=772013 QRM68_RS22540 WP_000839153.1 4285932..4286561(-) (sxy/tfoX) [Escherichia coli strain APEC37]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=772013 QRM68_RS22540 WP_000839153.1 4285932..4286561(-) (sxy/tfoX) [Escherichia coli strain APEC37]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1