Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PCS92_RS14745 Genome accession   NZ_CP115361
Coordinates   2960794..2961423 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CUVET20-1667     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2955794..2966423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS92_RS14730 (PCS92_14725) helD 2956036..2958090 (-) 2055 WP_001295354.1 DNA helicase IV -
  PCS92_RS14735 (PCS92_14730) yccF 2958213..2958659 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PCS92_RS14740 (PCS92_14735) yccS 2958669..2960831 (+) 2163 WP_000875058.1 YccS family putative transporter -
  PCS92_RS14745 (PCS92_14740) sxy/tfoX 2960794..2961423 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PCS92_RS14750 (PCS92_14745) sulA 2961642..2962151 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PCS92_RS14755 (PCS92_14750) ompA 2962508..2963548 (+) 1041 WP_001400178.1 porin OmpA -
  PCS92_RS14760 (PCS92_14755) matP 2963624..2964076 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PCS92_RS14765 (PCS92_14760) ycbZ 2964262..2966022 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=772000 PCS92_RS14745 WP_000839153.1 2960794..2961423(-) (sxy/tfoX) [Escherichia coli strain CUVET20-1667]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=772000 PCS92_RS14745 WP_000839153.1 2960794..2961423(-) (sxy/tfoX) [Escherichia coli strain CUVET20-1667]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1