Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PCS84_RS09300 Genome accession   NZ_CP115358
Coordinates   1943317..1943946 (+) Length   209 a.a.
NCBI ID   WP_000839133.1    Uniprot ID   A0A1M2IUY6
Organism   Escherichia coli strain CUVET19-1704     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1938317..1948946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS84_RS09280 (PCS84_09280) ycbZ 1938705..1940465 (-) 1761 WP_000156477.1 Lon protease family protein -
  PCS84_RS09285 (PCS84_09285) matP 1940651..1941103 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PCS84_RS09290 (PCS84_09290) ompA 1941181..1942233 (-) 1053 WP_001346420.1 porin OmpA -
  PCS84_RS09295 (PCS84_09295) sulA 1942590..1943099 (-) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  PCS84_RS09300 (PCS84_09300) sxy/tfoX 1943317..1943946 (+) 630 WP_000839133.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PCS84_RS09305 (PCS84_09305) yccS 1943909..1946071 (-) 2163 WP_000875039.1 YccS family putative transporter -
  PCS84_RS09310 (PCS84_09310) yccF 1946081..1946527 (-) 447 WP_001261235.1 YccF domain-containing protein -
  PCS84_RS09315 (PCS84_09315) helD 1946650..1948704 (+) 2055 WP_001361412.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=771975 PCS84_RS09300 WP_000839133.1 1943317..1943946(+) (sxy/tfoX) [Escherichia coli strain CUVET19-1704]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTIDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=771975 PCS84_RS09300 WP_000839133.1 1943317..1943946(+) (sxy/tfoX) [Escherichia coli strain CUVET19-1704]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCATTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M2IUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995