Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PCS94_RS14500 Genome accession   NZ_CP115351
Coordinates   2983849..2984478 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CUVET21-37     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2978849..2989478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS94_RS14485 (PCS94_14475) helD 2979091..2981145 (-) 2055 WP_000420533.1 DNA helicase IV -
  PCS94_RS14490 (PCS94_14480) yccF 2981268..2981714 (+) 447 WP_001261231.1 YccF domain-containing protein -
  PCS94_RS14495 (PCS94_14485) yccS 2981724..2983886 (+) 2163 WP_000875020.1 YccS family putative transporter -
  PCS94_RS14500 (PCS94_14490) sxy/tfoX 2983849..2984478 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PCS94_RS14505 (PCS94_14495) sulA 2984697..2985206 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PCS94_RS14510 (PCS94_14500) ompA 2985563..2986603 (+) 1041 WP_000750416.1 porin OmpA -
  PCS94_RS14515 (PCS94_14505) matP 2986679..2987131 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PCS94_RS14520 (PCS94_14510) ycbZ 2987317..2989077 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=771956 PCS94_RS14500 WP_000839153.1 2983849..2984478(-) (sxy/tfoX) [Escherichia coli strain CUVET21-37]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=771956 PCS94_RS14500 WP_000839153.1 2983849..2984478(-) (sxy/tfoX) [Escherichia coli strain CUVET21-37]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1