Detailed information NTG0771948

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QRM68_RS02150
• Genome accession: NZ_CP127303
• Coordinates: 127400..128392 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain APEC37
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 122400..133392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRM68_RS02125 (QRM68_02125)	pphB	123762..124418 (+)	657	WP_040234893.1	protein-serine/threonine phosphatase	-
QRM68_RS02130 (QRM68_02130)	-	124459..124695 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QRM68_RS02135 (QRM68_02135)	-	124706..126133 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QRM68_RS02140 (QRM68_02140)	-	126133..126726 (-)	594	WP_040234895.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QRM68_RS02145 (QRM68_02145)	-	126873..127280 (+)	408	WP_001208062.1	MarR family transcriptional regulator	-
QRM68_RS02150 (QRM68_02150)	rpoS	127400..128392 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QRM68_RS02155 (QRM68_02155)	nlpD	128455..129548 (-)	1094	Protein_139	murein hydrolase activator NlpD	-
QRM68_RS02160 (QRM68_02160)	pcm	129733..130359 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QRM68_RS02165 (QRM68_02165)	surE	130353..131114 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QRM68_RS02170 (QRM68_02170)	truD	131095..132144 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QRM68_RS02175 (QRM68_02175)	ispF	132141..132620 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QRM68_RS02180 (QRM68_02180)	ispD	132620..133330 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=771948 QRM68_RS02150 WP_000081550.1 127400..128392(-) (rpoS) [Escherichia coli strain APEC37]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=771948 QRM68_RS02150 WP_000081550.1 127400..128392(-) (rpoS) [Escherichia coli strain APEC37]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715