Detailed information NTG0771901

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QRM67_RS06980
• Genome accession: NZ_CP127297
• Coordinates: 1449645..1450637 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain APEC20/16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1444645..1455637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRM67_RS06950 (QRM67_06950)	ispD	1444707..1445417 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QRM67_RS06955 (QRM67_06955)	ispF	1445417..1445896 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QRM67_RS06960 (QRM67_06960)	truD	1445893..1446942 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QRM67_RS06965 (QRM67_06965)	surE	1446923..1447683 (+)	761	Protein_1345	5'/3'-nucleotidase SurE	-
QRM67_RS06970 (QRM67_06970)	pcm	1447677..1448303 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QRM67_RS06975 (QRM67_06975)	nlpD	1448488..1449582 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QRM67_RS06980 (QRM67_06980)	rpoS	1449645..1450637 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QRM67_RS06985 (QRM67_06985)	-	1450757..1451164 (-)	408	WP_001208062.1	MarR family transcriptional regulator	-
QRM67_RS06990 (QRM67_06990)	-	1451311..1451904 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QRM67_RS06995 (QRM67_06995)	-	1451904..1453331 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QRM67_RS07000 (QRM67_07000)	-	1453342..1453578 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QRM67_RS07005 (QRM67_07005)	ygbN	1453617..1454981 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=771901 QRM67_RS06980 WP_000081550.1 1449645..1450637(+) (rpoS) [Escherichia coli strain APEC20/16]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=771901 QRM67_RS06980 WP_000081550.1 1449645..1450637(+) (rpoS) [Escherichia coli strain APEC20/16]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715