Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QRM67_RS03585 Genome accession   NZ_CP127297
Coordinates   769073..769540 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain APEC20/16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764073..774540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRM67_RS03560 (QRM67_03560) rpsG 764214..764684 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  QRM67_RS03565 (QRM67_03565) fusA 764781..766895 (+) 2115 WP_000124700.1 elongation factor G -
  QRM67_RS03570 (QRM67_03570) tuf 766966..768150 (+) 1185 WP_000031783.1 elongation factor Tu -
  QRM67_RS03575 (QRM67_03575) bfd 768333..768527 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QRM67_RS03580 (QRM67_03580) bfr 768600..769076 (+) 477 WP_000675515.1 bacterioferritin -
  QRM67_RS03585 (QRM67_03585) pilD 769073..769540 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  QRM67_RS03590 (QRM67_03590) rpsJ 769919..770230 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  QRM67_RS03595 (QRM67_03595) rplC 770263..770892 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  QRM67_RS03600 (QRM67_03600) rplD 770903..771508 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  QRM67_RS03605 (QRM67_03605) rplW 771505..771807 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  QRM67_RS03610 (QRM67_03610) rplB 771825..772646 (+) 822 WP_286004929.1 50S ribosomal protein L2 -
  QRM67_RS03615 (QRM67_03615) rpsS 772663..772941 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  QRM67_RS03620 (QRM67_03620) rplV 772956..773288 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  QRM67_RS03625 (QRM67_03625) rpsC 773306..774007 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  QRM67_RS03630 (QRM67_03630) rplP 774020..774430 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=771889 QRM67_RS03585 WP_000340171.1 769073..769540(-) (pilD) [Escherichia coli strain APEC20/16]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=771889 QRM67_RS03585 WP_000340171.1 769073..769540(-) (pilD) [Escherichia coli strain APEC20/16]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361