Detailed information NTG0771840

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMY53_RS15955
• Genome accession: NZ_CP127265
• Coordinates: 3217948..3218940 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli TW14425
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3212948..3223940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMY53_RS15925 (QMY53_03128)	ispD	3213009..3213719 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QMY53_RS15930 (QMY53_03129)	ispF	3213719..3214198 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMY53_RS15935 (QMY53_03130)	truD	3214195..3215244 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QMY53_RS15940 (QMY53_03131)	surE	3215225..3215986 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QMY53_RS15945 (QMY53_03132)	pcm	3215980..3216606 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QMY53_RS15950 (QMY53_03133)	nlpD	3216791..3217885 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QMY53_RS15955 (QMY53_03134)	rpoS	3217948..3218940 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QMY53_RS15960 (QMY53_03135)	ygbN	3219034..3220398 (-)	1365	WP_000104456.1	GntP family transporter	-
QMY53_RS15965 (QMY53_03136)	ygbM	3220487..3221263 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QMY53_RS15970 (QMY53_03137)	ygbL	3221268..3221906 (-)	639	WP_001278994.1	aldolase	-
QMY53_RS15975 (QMY53_03138)	otnK	3221903..3223165 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=771840 QMY53_RS15955 WP_000081550.1 3217948..3218940(+) (rpoS) [Escherichia coli TW14425]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=771840 QMY53_RS15955 WP_000081550.1 3217948..3218940(+) (rpoS) [Escherichia coli TW14425]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715