Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PCS95_RS14135 Genome accession   NZ_CP115312
Coordinates   2892857..2893486 (-) Length   209 a.a.
NCBI ID   WP_032161475.1    Uniprot ID   -
Organism   Escherichia coli strain CUVET18-789     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2887857..2898486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS95_RS14120 (PCS95_14110) helD 2888099..2890153 (-) 2055 WP_166488234.1 DNA helicase IV -
  PCS95_RS14125 (PCS95_14115) yccF 2890276..2890722 (+) 447 WP_032161476.1 YccF domain-containing protein -
  PCS95_RS14130 (PCS95_14120) yccS 2890732..2892894 (+) 2163 WP_166488220.1 YccS family putative transporter -
  PCS95_RS14135 (PCS95_14125) sxy/tfoX 2892857..2893486 (-) 630 WP_032161475.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PCS95_RS14140 (PCS95_14130) sulA 2893704..2894213 (+) 510 WP_032161474.1 SOS-induced cell division inhibitor SulA -
  PCS95_RS14145 (PCS95_14135) ompA 2894570..2895625 (+) 1056 WP_166488219.1 porin OmpA -
  PCS95_RS14150 (PCS95_14140) matP 2895699..2896151 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PCS95_RS14155 (PCS95_14145) ycbZ 2896337..2898097 (+) 1761 WP_166488218.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24183.99 Da        Isoelectric Point: 8.4291

>NTDB_id=771821 PCS95_RS14135 WP_032161475.1 2892857..2893486(-) (sxy/tfoX) [Escherichia coli strain CUVET18-789]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVLLSKYSLDAALKEKSTRDTQQRLKDLPNMSYHLEAILGEVGIKDVRALRILGAKMCWLRLRQHN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSITPKQEFPEELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=771821 PCS95_RS14135 WP_032161475.1 2892857..2893486(-) (sxy/tfoX) [Escherichia coli strain CUVET18-789]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTGGCGACGTTAGGCACTATTGAATATCGATCGTT
GTTTGGCAGTTACAGTCTGACCGTTGACGACACAGTATTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGAGCTTGTG
AGCAAAGCGCACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGTGGCCGCCCCGTTACTCTCAAT
TACTACCGGGTTGATGAAAGCCTATGGCGGAATCAACAGAAGTTGGTTCTGCTGTCGAAATATTCACTGGACGCTGCGCT
TAAAGAGAAAAGCACGCGCGATACCCAACAACGGCTGAAAGATTTGCCCAATATGTCTTATCACCTGGAAGCGATTCTCG
GGGAAGTGGGGATTAAGGATGTTCGGGCGCTACGTATACTTGGGGCGAAAATGTGCTGGTTGAGACTACGGCAGCATAAC
AGTCTGGTGACAGAAAAGATTCTGTTCATGCTTGAAGGGGCAATTATCGGTATCCATGAAGCAGCGCTCCCGGTGGCGCG
CCGCCAGGAGCTTGCAGAATGGGCTGATTCTATTACACCGAAACAGGAGTTTCCTGAGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

95.215

100

0.952