Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GVV68_RS29895 Genome accession   NZ_CP115307
Coordinates   4992387..4993736 (-) Length   449 a.a.
NCBI ID   WP_087948324.1    Uniprot ID   -
Organism   Bacillus cereus strain BC-01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4987387..4998736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVV68_RS29860 (GVV68_29865) - 4987425..4988120 (-) 696 WP_000466510.1 hypothetical protein -
  GVV68_RS29865 (GVV68_29870) - 4988107..4988895 (-) 789 WP_000120047.1 hypothetical protein -
  GVV68_RS29870 (GVV68_29875) - 4988923..4989492 (-) 570 WP_001211057.1 hypothetical protein -
  GVV68_RS29875 (GVV68_29880) - 4989610..4990083 (-) 474 WP_000511546.1 hypothetical protein -
  GVV68_RS29880 (GVV68_29885) hpf 4990488..4991036 (-) 549 WP_087948323.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GVV68_RS29885 (GVV68_29890) cspC 4991359..4991556 (-) 198 WP_001990088.1 cold shock protein CspC -
  GVV68_RS29890 (GVV68_29895) - 4991683..4992387 (-) 705 WP_033667188.1 ComF family protein -
  GVV68_RS29895 (GVV68_29900) comFA 4992387..4993736 (-) 1350 WP_087948324.1 ATP-dependent helicase ComFA Machinery gene
  GVV68_RS29900 (GVV68_29905) - 4993864..4995294 (-) 1431 WP_000499471.1 NlpC/P60 family protein -
  GVV68_RS29905 (GVV68_29910) - 4995443..4995757 (-) 315 WP_000400857.1 winged helix-turn-helix transcriptional regulator -
  GVV68_RS29910 (GVV68_29915) - 4995930..4996772 (-) 843 WP_002103834.1 DegV family protein -
  GVV68_RS29915 (GVV68_29920) - 4997009..4997644 (+) 636 WP_000926665.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51052.99 Da        Isoelectric Point: 9.9772

>NTDB_id=771802 GVV68_RS29895 WP_087948324.1 4992387..4993736(-) (comFA) [Bacillus cereus strain BC-01]
MLAGKQLLLEELSSDLQRELNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCAYCRKCITMGRVS
ECAVLVRGIAERKREKNLNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIQIAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADRMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIVSGRYHRHPLPVPLFCWCGNWKKKLMHKRIPRVLLQWLQTYLNKNSPIFL
FVPHVRYIEEISLLLKLLNNRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=771802 GVV68_RS29895 WP_087948324.1 4992387..4993736(-) (comFA) [Bacillus cereus strain BC-01]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCGCATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAACTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGAATTAACGAAGCGCTTCAAAAGGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATACAGATAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCGAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTGTTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGTGGGAATTGGAAAAAAA
AACTCATGCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAATTCCCCTATTTTTTTA
TTCGTCCCCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACTATTAAATAATCGAATTGAAGGTGTACATGC
AGAAGATCCGGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTCGCAGTTTTGGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCGCCGTATGGAGAGGTCATTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATTGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(312-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.357

98.441

0.506
  comFA Latilactobacillus sakei subsp. sakei 23K

41.687

89.755

0.374