Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QMY53_RS03955 Genome accession   NZ_CP127265
Coordinates   769461..770066 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli TW14425     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 764461..775066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY53_RS03935 (QMY53_00763) aes 764498..765457 (+) 960 WP_000801846.1 acetyl esterase -
  QMY53_RS03940 (QMY53_00764) hemH 765454..766416 (-) 963 WP_001250088.1 ferrochelatase -
  QMY53_RS03945 (QMY53_00765) adk 766652..767296 (-) 645 WP_001220233.1 adenylate kinase -
  QMY53_RS03950 (QMY53_00766) htpG 767477..769351 (-) 1875 WP_000678213.1 molecular chaperone HtpG -
  QMY53_RS03955 (QMY53_00767) recR 769461..770066 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QMY53_RS03960 (QMY53_00768) ybaB 770066..770395 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QMY53_RS03965 (QMY53_00769) dnaX 770448..772379 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QMY53_RS03970 (QMY53_00770) apt 772508..773059 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QMY53_RS03975 (QMY53_00771) ybaN 773212..773589 (-) 378 WP_001188905.1 DUF454 family protein -
  QMY53_RS03980 (QMY53_00772) priC 773659..774186 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QMY53_RS03985 (QMY53_00773) rsmS 774200..774361 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=771793 QMY53_RS03955 WP_001195025.1 769461..770066(-) (recR) [Escherichia coli TW14425]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=771793 QMY53_RS03955 WP_001195025.1 769461..770066(-) (recR) [Escherichia coli TW14425]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443