Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GVV68_RS24060 Genome accession   NZ_CP115307
Coordinates   3927780..3928214 (-) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus cereus strain BC-01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3922780..3933214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVV68_RS24045 (GVV68_24050) - 3923958..3924515 (+) 558 WP_000062063.1 PadR family transcriptional regulator -
  GVV68_RS24050 (GVV68_24055) metE 3925027..3927315 (+) 2289 WP_001007604.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  GVV68_RS24055 (GVV68_24060) comJ 3927354..3927743 (-) 390 WP_017673606.1 competence protein ComJ -
  GVV68_RS24060 (GVV68_24065) nucA/comI 3927780..3928214 (-) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  GVV68_RS24065 (GVV68_24070) - 3928441..3929190 (+) 750 WP_000388471.1 DUF3967 domain-containing protein -
  GVV68_RS24070 (GVV68_24075) kinB 3929229..3930503 (-) 1275 WP_000420369.1 sporulation sensor histidine kinase KinB -
  GVV68_RS24075 (GVV68_24080) - 3930814..3931014 (+) 201 WP_000929277.1 hypothetical protein -
  GVV68_RS24080 (GVV68_24085) - 3931137..3932300 (+) 1164 WP_000434578.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=771788 GVV68_RS24060 WP_000811494.1 3927780..3928214(-) (nucA/comI) [Bacillus cereus strain BC-01]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=771788 GVV68_RS24060 WP_000811494.1 3927780..3928214(-) (nucA/comI) [Bacillus cereus strain BC-01]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGCGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549