Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GVV68_RS13970 Genome accession   NZ_CP115307
Coordinates   1924969..1925256 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus cereus strain BC-01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1919969..1930256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVV68_RS13950 (GVV68_13950) - 1921144..1921341 (+) 198 WP_001048097.1 DUF4083 domain-containing protein -
  GVV68_RS13955 (GVV68_13955) - 1921374..1921835 (+) 462 WP_000025000.1 NUDIX hydrolase -
  GVV68_RS13960 (GVV68_13960) nadE 1921885..1922703 (-) 819 WP_000174891.1 ammonia-dependent NAD(+) synthetase -
  GVV68_RS13965 (GVV68_13965) - 1922973..1924853 (+) 1881 WP_001025983.1 ABC transporter permease -
  GVV68_RS13970 (GVV68_13970) abrB 1924969..1925256 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GVV68_RS13975 (GVV68_13975) - 1925531..1926478 (+) 948 WP_000099756.1 serine protease -
  GVV68_RS13980 (GVV68_13980) - 1926526..1926864 (+) 339 Protein_1877 MFS transporter permease -
  GVV68_RS31485 - 1926913..1927119 (+) 207 WP_001101741.1 hypothetical protein -
  GVV68_RS13985 (GVV68_13985) - 1927263..1927625 (+) 363 WP_087948427.1 DUF805 domain-containing protein -
  GVV68_RS13990 (GVV68_13990) - 1927825..1928049 (-) 225 WP_000162602.1 hypothetical protein -
  GVV68_RS13995 (GVV68_13995) - 1928134..1928481 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  GVV68_RS14000 (GVV68_14000) - 1928678..1929205 (+) 528 WP_001018100.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=771779 GVV68_RS13970 WP_000648325.1 1924969..1925256(+) (abrB) [Bacillus cereus strain BC-01]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=771779 GVV68_RS13970 WP_000648325.1 1924969..1925256(+) (abrB) [Bacillus cereus strain BC-01]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526