Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GVV68_RS10520 Genome accession   NZ_CP115307
Coordinates   1245697..1246020 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain BC-01     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1240697..1251020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVV68_RS10495 (GVV68_10495) - 1241024..1242310 (+) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GVV68_RS10500 (GVV68_10500) sipW 1242502..1243071 (+) 570 WP_000767794.1 signal peptidase I SipW -
  GVV68_RS10505 (GVV68_10505) - 1243132..1243719 (+) 588 WP_000172854.1 CalY family protein -
  GVV68_RS10510 (GVV68_10510) - 1243839..1244642 (+) 804 WP_087948077.1 DUF4047 domain-containing protein -
  GVV68_RS10515 (GVV68_10515) calY 1245030..1245623 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  GVV68_RS10520 (GVV68_10520) sinR 1245697..1246020 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  GVV68_RS10525 (GVV68_10525) - 1246100..1246234 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  GVV68_RS10530 (GVV68_10530) inhA1 1246577..1248967 (+) 2391 WP_001035946.1 M6 family metalloprotease immune inhibitor InhA1 -
  GVV68_RS10535 (GVV68_10535) - 1249139..1250506 (+) 1368 WP_000028382.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=771776 GVV68_RS10520 WP_000578885.1 1245697..1246020(-) (sinR) [Bacillus cereus strain BC-01]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=771776 GVV68_RS10520 WP_000578885.1 1245697..1246020(-) (sinR) [Bacillus cereus strain BC-01]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692