Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QMY51_RS20895 Genome accession   NZ_CP127262
Coordinates   4263251..4264243 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain TW10828     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4258251..4269243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY51_RS20870 (QMY51_04113) ygbN 4258905..4260269 (+) 1365 WP_000104429.1 GntP family transporter -
  QMY51_RS20875 (QMY51_04114) - 4260309..4260545 (-) 237 WP_000562991.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  QMY51_RS20880 (QMY51_04115) - 4260556..4261983 (-) 1428 WP_000863224.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  QMY51_RS20885 (QMY51_04116) - 4261983..4262576 (-) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  QMY51_RS20890 (QMY51_04117) - 4262723..4263130 (+) 408 WP_001208070.1 MarR family winged helix-turn-helix transcriptional regulator -
  QMY51_RS20895 (QMY51_04118) rpoS 4263251..4264243 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  QMY51_RS20900 (QMY51_04119) nlpD 4264306..4265400 (-) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  QMY51_RS20905 (QMY51_04120) pcm 4265585..4266211 (-) 627 WP_000254701.1 protein-L-isoaspartate O-methyltransferase -
  QMY51_RS20910 (QMY51_04121) surE 4266205..4266966 (-) 762 WP_001349984.1 5'/3'-nucleotidase SurE -
  QMY51_RS20915 (QMY51_04122) truD 4266947..4267996 (-) 1050 WP_000568924.1 tRNA pseudouridine(13) synthase TruD -
  QMY51_RS20920 (QMY51_04123) ispF 4267993..4268472 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QMY51_RS20925 (QMY51_04124) ispD 4268472..4269182 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=771775 QMY51_RS20895 WP_000081550.1 4263251..4264243(-) (rpoS) [Escherichia coli strain TW10828]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=771775 QMY51_RS20895 WP_000081550.1 4263251..4264243(-) (rpoS) [Escherichia coli strain TW10828]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715