Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AVT_RS22600 Genome accession   NZ_CP115303
Coordinates   4353811..4354269 (-) Length   152 a.a.
NCBI ID   WP_000804871.1    Uniprot ID   A0A516QVQ1
Organism   Bacillus tropicus strain JMT105-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4348811..4359269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS22575 (AVT_22575) - 4348922..4350463 (-) 1542 WP_087966216.1 MDR family MFS transporter -
  AVT_RS22580 (AVT_22580) - 4350891..4351391 (+) 501 WP_270184833.1 hypothetical protein -
  AVT_RS22585 (AVT_22585) - 4351423..4351656 (-) 234 WP_033691462.1 SPP1 phage holin family protein -
  AVT_RS22590 (AVT_22590) - 4351821..4352462 (+) 642 WP_087966219.1 diguanylate cyclase domain-containing protein -
  AVT_RS22595 (AVT_22595) - 4353117..4353779 (+) 663 WP_000922488.1 YkyA family protein -
  AVT_RS22600 (AVT_22600) kre 4353811..4354269 (-) 459 WP_000804871.1 YkyB family protein Regulator
  AVT_RS22605 (AVT_22605) ppx 4354447..4355982 (+) 1536 WP_087966221.1 exopolyphosphatase -
  AVT_RS22610 (AVT_22610) - 4356091..4358199 (+) 2109 WP_270184834.1 polyphosphate kinase -
  AVT_RS22615 (AVT_22615) - 4358373..4358609 (-) 237 WP_087966225.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17773.49 Da        Isoelectric Point: 10.6793

>NTDB_id=771754 AVT_RS22600 WP_000804871.1 4353811..4354269(-) (kre) [Bacillus tropicus strain JMT105-2]
MKPSQPQSQLQNQHSINRLAQSVFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=771754 AVT_RS22600 WP_000804871.1 4353811..4354269(-) (kre) [Bacillus tropicus strain JMT105-2]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTGTTTTCGTTGTGAA
TCGCCATGCTAAAGCTGCTACTAATCCGAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGCTTAATTACTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTCTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTACTTTTTCCATATTCCTCCTACAAAAGAAGATTTTCGAATCCTACCACATCTCGGTCATCTTGAATCCTCCTA
TCGAAACCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCGCTAAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516QVQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

65.517

76.316

0.5