Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AVT_RS22555 Genome accession   NZ_CP115303
Coordinates   4344419..4344853 (+) Length   144 a.a.
NCBI ID   WP_000811502.1    Uniprot ID   A0A5C5ACH0
Organism   Bacillus tropicus strain JMT105-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4339419..4349853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS22535 (AVT_22535) - 4340314..4341471 (-) 1158 WP_087966208.1 aminotransferase A -
  AVT_RS22540 (AVT_22540) - 4341595..4341795 (-) 201 WP_000929285.1 hypothetical protein -
  AVT_RS22545 (AVT_22545) kinB 4342105..4343379 (+) 1275 WP_000420393.1 sporulation sensor histidine kinase KinB -
  AVT_RS22550 (AVT_22550) - 4343433..4344182 (-) 750 WP_000388464.1 DUF3967 domain-containing protein -
  AVT_RS22555 (AVT_22555) nucA/comI 4344419..4344853 (+) 435 WP_000811502.1 DNA-entry nuclease Machinery gene
  AVT_RS22560 (AVT_22560) comJ 4344890..4345279 (+) 390 WP_087966210.1 competence protein ComJ -
  AVT_RS22565 (AVT_22565) metE 4345317..4347605 (-) 2289 WP_270184832.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AVT_RS22570 (AVT_22570) - 4348273..4348830 (-) 558 WP_087966214.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16010.38 Da        Isoelectric Point: 8.4331

>NTDB_id=771753 AVT_RS22555 WP_000811502.1 4344419..4344853(+) (nucA/comI) [Bacillus tropicus strain JMT105-2]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=771753 AVT_RS22555 WP_000811502.1 4344419..4344853(+) (nucA/comI) [Bacillus tropicus strain JMT105-2]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAGGAAACAAGTATTAAAAAAACAAATGCATATGATCAAGTTCTAGAATTTCCGAAAGAGCGATATCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGACATTCGGAAGTGTGTACAATCGACCGTGGTGGTGCTGCGGATAGAAGAAAA
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACACATTGAATATATAAGTCCAGCAGATAACCGTGGAGCAGGGTCTTGGGTAGGAAATAAGCTAGATAAATACC
CGGATGGTACGCGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5ACH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.171

77.083

0.549