Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | AVT_RS21335 | Genome accession | NZ_CP115303 |
| Coordinates | 4136776..4137819 (+) | Length | 347 a.a. |
| NCBI ID | WP_061658329.1 | Uniprot ID | - |
| Organism | Bacillus tropicus strain JMT105-2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4131776..4142819
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVT_RS21300 (AVT_21300) | - | 4132032..4132406 (+) | 375 | WP_098224616.1 | nucleoside 2-deoxyribosyltransferase | - |
| AVT_RS21305 (AVT_21305) | - | 4132486..4132974 (+) | 489 | WP_270184793.1 | hypothetical protein | - |
| AVT_RS21310 (AVT_21310) | - | 4133010..4133321 (-) | 312 | WP_001093243.1 | hypothetical protein | - |
| AVT_RS21315 (AVT_21315) | - | 4133574..4133789 (+) | 216 | WP_131100734.1 | DUF3912 family protein | - |
| AVT_RS21320 (AVT_21320) | - | 4134005..4135399 (-) | 1395 | WP_001094339.1 | L-cystine transporter | - |
| AVT_RS21325 (AVT_21325) | - | 4135507..4135749 (-) | 243 | WP_029439921.1 | DUF2626 domain-containing protein | - |
| AVT_RS21330 (AVT_21330) | - | 4135875..4136570 (-) | 696 | WP_029439920.1 | helix-turn-helix transcriptional regulator | - |
| AVT_RS21335 (AVT_21335) | comGA | 4136776..4137819 (+) | 1044 | WP_061658329.1 | competence protein ComGA | Machinery gene |
| AVT_RS21340 (AVT_21340) | comGB | 4137812..4138843 (+) | 1032 | WP_087966001.1 | competence type IV pilus assembly protein ComGB | - |
| AVT_RS21345 (AVT_21345) | comGC | 4138855..4139154 (+) | 300 | WP_002194509.1 | comG operon protein ComGC | - |
| AVT_RS21350 (AVT_21350) | comGD | 4139151..4139606 (+) | 456 | WP_087966003.1 | comG operon protein ComGD | - |
| AVT_RS21355 (AVT_21355) | comGE | 4139599..4139901 (+) | 303 | WP_131100733.1 | competence type IV pilus minor pilin ComGE | - |
| AVT_RS21360 (AVT_21360) | comGF | 4139871..4140341 (+) | 471 | WP_029439915.1 | competence type IV pilus minor pilin ComGF | - |
| AVT_RS21365 (AVT_21365) | comGG | 4140338..4140709 (+) | 372 | WP_073543559.1 | competence type IV pilus minor pilin ComGG | - |
| AVT_RS21370 (AVT_21370) | - | 4140850..4141500 (+) | 651 | WP_087966005.1 | 2OG-Fe(II) oxygenase | - |
| AVT_RS21375 (AVT_21375) | aroK | 4141619..4142116 (+) | 498 | WP_270184794.1 | shikimate kinase AroK | - |
| AVT_RS21380 (AVT_21380) | - | 4142155..4142355 (+) | 201 | WP_000106081.1 | YqzE family protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 39150.58 Da Isoelectric Point: 9.0895
>NTDB_id=771750 AVT_RS21335 WP_061658329.1 4136776..4137819(+) (comGA) [Bacillus tropicus strain JMT105-2]
MNGIESFANTILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRSDDLLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFIDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKGANGEC
VTSKHETLESSIRKGYALGFLEEDVYV
MNGIESFANTILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRSDDLLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFIDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKGANGEC
VTSKHETLESSIRKGYALGFLEEDVYV
Nucleotide
Download Length: 1044 bp
>NTDB_id=771750 AVT_RS21335 WP_061658329.1 4136776..4137819(+) (comGA) [Bacillus tropicus strain JMT105-2]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGATTTACACATTGTGCC
CCGACAGAAGGATGTAGTGGTTCAACTGCGTATAGGGAAAGATTTAATGACGAAACAATGCATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCGCTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCTACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGTTCTGGGAAGACAACAACGATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACACTGGAGGATCCAGTTGAAAAAAGAAGTGACGATTTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACACTGCAT
ACAAATGATGCGAGAGGGGCGATACTCAGGTTCATAGATTTTGGCATAACGAGGCAAGAGATTGAACAATCTTTATTAGC
TATAGCTGCACAGAGACTTGTCGAATTAAAGTGTCCGTTTTGTAAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAATTAAAACAAGCGATTAAAGGAGCAAACGGGGAATGC
GTCACATCCAAGCATGAAACGTTAGAATCTTCGATAAGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGATTTACACATTGTGCC
CCGACAGAAGGATGTAGTGGTTCAACTGCGTATAGGGAAAGATTTAATGACGAAACAATGCATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCGCTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCTACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGTTCTGGGAAGACAACAACGATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACACTGGAGGATCCAGTTGAAAAAAGAAGTGACGATTTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACACTGCAT
ACAAATGATGCGAGAGGGGCGATACTCAGGTTCATAGATTTTGGCATAACGAGGCAAGAGATTGAACAATCTTTATTAGC
TATAGCTGCACAGAGACTTGTCGAATTAAAGTGTCCGTTTTGTAAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAATTAAAACAAGCGATTAAAGGAGCAAACGGGGAATGC
GTCACATCCAAGCATGAAACGTTAGAATCTTCGATAAGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
57.061 |
100 |
0.571 |