Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AVT_RS21070 Genome accession   NZ_CP115303
Coordinates   4084743..4085489 (+) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus tropicus strain JMT105-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4079743..4090489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS21040 (AVT_21040) - 4080032..4082176 (+) 2145 WP_000946450.1 HD family phosphohydrolase -
  AVT_RS21045 (AVT_21045) ybeY 4082173..4082643 (+) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  AVT_RS21050 (AVT_21050) - 4082640..4082993 (+) 354 WP_078417922.1 diacylglycerol kinase family protein -
  AVT_RS21055 (AVT_21055) - 4083093..4083491 (+) 399 WP_001086294.1 cytidine deaminase -
  AVT_RS21060 (AVT_21060) era 4083484..4084389 (+) 906 WP_087965953.1 GTPase Era -
  AVT_RS21065 (AVT_21065) - 4084566..4084709 (+) 144 WP_000883924.1 YqzL family protein -
  AVT_RS21070 (AVT_21070) recO 4084743..4085489 (+) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  AVT_RS21075 (AVT_21075) - 4085597..4086229 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  AVT_RS21080 (AVT_21080) - 4086259..4087071 (+) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  AVT_RS21085 (AVT_21085) - 4087439..4087570 (+) 132 WP_087965954.1 hypothetical protein -
  AVT_RS21090 (AVT_21090) dnaG 4087924..4089720 (+) 1797 WP_000528216.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=771749 AVT_RS21070 WP_000487010.1 4084743..4085489(+) (recO) [Bacillus tropicus strain JMT105-2]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=771749 AVT_RS21070 WP_000487010.1 4084743..4085489(+) (recO) [Bacillus tropicus strain JMT105-2]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAGCTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACAAAAATGCTTCCGGTATTAGGGATGCGCCCATACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552