Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AVT_RS15290 Genome accession   NZ_CP115303
Coordinates   2971933..2973060 (-) Length   375 a.a.
NCBI ID   WP_000470746.1    Uniprot ID   A0A243B7E4
Organism   Bacillus tropicus strain JMT105-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2966933..2978060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS15280 (AVT_15280) gyrA 2967412..2969883 (-) 2472 WP_071758537.1 DNA gyrase subunit A -
  AVT_RS15285 (AVT_15285) gyrB 2969972..2971894 (-) 1923 WP_000435986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AVT_RS15290 (AVT_15290) recF 2971933..2973060 (-) 1128 WP_000470746.1 DNA replication/repair protein RecF Machinery gene
  AVT_RS15295 (AVT_15295) yaaA 2973073..2973285 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  AVT_RS15300 (AVT_15300) dnaN 2973413..2974552 (-) 1140 WP_001212891.1 DNA polymerase III subunit beta -
  AVT_RS15305 (AVT_15305) dnaA 2974731..2976071 (-) 1341 WP_000428025.1 chromosomal replication initiator protein DnaA -
  AVT_RS15310 (AVT_15310) rpmH 2976637..2976771 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  AVT_RS15315 (AVT_15315) rnpA 2976848..2977195 (+) 348 WP_029440294.1 ribonuclease P protein component -
  AVT_RS15320 (AVT_15320) spoIIIJ 2977248..2978015 (+) 768 WP_087968542.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43304.63 Da        Isoelectric Point: 6.7809

>NTDB_id=771735 AVT_RS15290 WP_000470746.1 2971933..2973060(-) (recF) [Bacillus tropicus strain JMT105-2]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=771735 AVT_RS15290 WP_000470746.1 2971933..2973060(-) (recF) [Bacillus tropicus strain JMT105-2]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAGAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAGGGGAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAGATATTGCAAAAGCGTTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATCCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243B7E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653