Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AVT_RS08810 Genome accession   NZ_CP115303
Coordinates   1691863..1692186 (+) Length   107 a.a.
NCBI ID   WP_060630023.1    Uniprot ID   A0A164MRU2
Organism   Bacillus tropicus strain JMT105-2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686863..1697186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS08795 (AVT_08795) - 1687376..1688743 (-) 1368 WP_087965348.1 aldehyde dehydrogenase -
  AVT_RS08800 (AVT_08800) inhA1 1688916..1691306 (-) 2391 WP_270185371.1 M6 family metalloprotease immune inhibitor InhA1 -
  AVT_RS08805 (AVT_08805) - 1691649..1691783 (+) 135 WP_048526766.1 anti-repressor SinI family protein -
  AVT_RS08810 (AVT_08810) sinR 1691863..1692186 (+) 324 WP_060630023.1 helix-turn-helix domain-containing protein Regulator
  AVT_RS08815 (AVT_08815) calY 1692267..1692860 (-) 594 WP_087965352.1 biofilm matrix protein CalY -
  AVT_RS08820 (AVT_08820) - 1693284..1694054 (-) 771 WP_131101696.1 DUF4047 domain-containing protein -
  AVT_RS08825 (AVT_08825) - 1694216..1694803 (-) 588 WP_000172849.1 CalY family protein -
  AVT_RS08830 (AVT_08830) sipW 1694866..1695435 (-) 570 WP_087965356.1 signal peptidase I SipW -
  AVT_RS08835 (AVT_08835) - 1695628..1696914 (-) 1287 WP_000247010.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12329.16 Da        Isoelectric Point: 8.5614

>NTDB_id=771718 AVT_RS08810 WP_060630023.1 1691863..1692186(+) (sinR) [Bacillus tropicus strain JMT105-2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETAKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=771718 AVT_RS08810 WP_060630023.1 1691863..1692186(+) (sinR) [Bacillus tropicus strain JMT105-2]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAGCAAAGGAAAATCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A164MRU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692