Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AVT_RS07480 Genome accession   NZ_CP115303
Coordinates   1448585..1449187 (+) Length   200 a.a.
NCBI ID   WP_000155595.1    Uniprot ID   -
Organism   Bacillus tropicus strain JMT105-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1443585..1454187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS07435 (AVT_07435) gpsB 1443923..1444261 (-) 339 WP_000622430.1 cell division regulator GpsB -
  AVT_RS07440 (AVT_07440) - 1444359..1444913 (-) 555 WP_000862921.1 DUF1273 domain-containing protein -
  AVT_RS07445 (AVT_07445) - 1444971..1445393 (-) 423 WP_000546264.1 CotD family spore coat protein -
  AVT_RS07450 (AVT_07450) - 1445548..1446048 (-) 501 WP_270185350.1 YppG family protein -
  AVT_RS07455 (AVT_07455) - 1446226..1446417 (+) 192 WP_000242660.1 YppF family protein -
  AVT_RS07460 (AVT_07460) - 1446442..1446786 (-) 345 WP_000872961.1 YppE family protein -
  AVT_RS07465 (AVT_07465) - 1446802..1447044 (-) 243 WP_001252039.1 hypothetical protein -
  AVT_RS07470 (AVT_07470) - 1447130..1447306 (+) 177 WP_002020884.1 hypothetical protein -
  AVT_RS07475 (AVT_07475) - 1447456..1448481 (-) 1026 WP_087964994.1 DUF2515 domain-containing protein -
  AVT_RS07480 (AVT_07480) recU 1448585..1449187 (+) 603 WP_000155595.1 Holliday junction resolvase RecU Machinery gene
  AVT_RS07485 (AVT_07485) - 1449253..1451961 (+) 2709 WP_073542155.1 PBP1A family penicillin-binding protein -
  AVT_RS07490 (AVT_07490) - 1451985..1452503 (-) 519 WP_033692812.1 YpoC family protein -
  AVT_RS07495 (AVT_07495) nth 1452507..1453154 (-) 648 WP_000933027.1 endonuclease III -
  AVT_RS07500 (AVT_07500) dnaD 1453170..1453877 (-) 708 WP_000728549.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23338.66 Da        Isoelectric Point: 9.5337

>NTDB_id=771716 AVT_RS07480 WP_000155595.1 1448585..1449187(+) (recU) [Bacillus tropicus strain JMT105-2]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKYIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=771716 AVT_RS07480 WP_000155595.1 1448585..1449187(+) (recU) [Bacillus tropicus strain JMT105-2]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAGCCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAATATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625