Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AVT_RS05520 Genome accession   NZ_CP115303
Coordinates   1049855..1050142 (-) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus tropicus strain JMT105-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044855..1055142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS05500 (AVT_05500) - 1045254..1046114 (+) 861 WP_270185274.1 AraC family transcriptional regulator -
  AVT_RS05505 (AVT_05505) - 1046183..1047046 (+) 864 WP_087964312.1 PucR family transcriptional regulator -
  AVT_RS05510 (AVT_05510) - 1047314..1048417 (+) 1104 WP_087964313.1 ABC transporter ATP-binding protein -
  AVT_RS05515 (AVT_05515) - 1048631..1049581 (-) 951 WP_001089039.1 serine protease -
  AVT_RS05520 (AVT_05520) abrB 1049855..1050142 (-) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AVT_RS05525 (AVT_05525) - 1050258..1052138 (-) 1881 WP_270185275.1 ABC transporter permease -
  AVT_RS05530 (AVT_05530) nadE 1052410..1053228 (+) 819 WP_000174883.1 ammonia-dependent NAD(+) synthetase -
  AVT_RS05535 (AVT_05535) - 1053274..1053735 (-) 462 WP_000024988.1 NUDIX hydrolase -
  AVT_RS05540 (AVT_05540) - 1053759..1053956 (-) 198 WP_001048099.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=771715 AVT_RS05520 WP_000648330.1 1049855..1050142(-) (abrB) [Bacillus tropicus strain JMT105-2]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=771715 AVT_RS05520 WP_000648330.1 1049855..1050142(-) (abrB) [Bacillus tropicus strain JMT105-2]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516