Detailed information NTG0771704

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQ972_RS22495
• Genome accession: NZ_CP127255
• Coordinates: 4627914..4628906 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Q5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4622914..4633906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ972_RS22470 (QQ972_22470)	ygbM	4623551..4624327 (+)	777	WP_001136913.1	HPr family phosphocarrier protein	-
QQ972_RS22475 (QQ972_22475)	ygbN	4624416..4625780 (+)	1365	WP_000104433.1	GntP family transporter	-
QQ972_RS22480 (QQ972_22480)	-	4625923..4626967 (-)	1045	Protein_4396	MBL fold metallo-hydrolase	-
QQ972_RS22490 (QQ972_22490)	-	4627192..4627743 (+)	552	WP_001179443.1	flavodoxin family protein	-
QQ972_RS22495 (QQ972_22495)	rpoS	4627914..4628906 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QQ972_RS22500 (QQ972_22500)	nlpD	4628969..4630063 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QQ972_RS22505 (QQ972_22505)	pcm	4630248..4630874 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QQ972_RS22510 (QQ972_22510)	surE	4630868..4631629 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QQ972_RS22515 (QQ972_22515)	truD	4631610..4632659 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
QQ972_RS22520 (QQ972_22520)	ispF	4632656..4633135 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQ972_RS22525 (QQ972_22525)	ispD	4633135..4633845 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=771704 QQ972_RS22495 WP_000081550.1 4627914..4628906(-) (rpoS) [Escherichia coli strain Q5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=771704 QQ972_RS22495 WP_000081550.1 4627914..4628906(-) (rpoS) [Escherichia coli strain Q5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715