Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP34_RS00825 Genome accession   NZ_CP115299
Coordinates   177916..178473 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172916..183473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP34_RS00810 (PCP34_00810) pilY1 173014..176499 (-) 3486 WP_023518093.1 type 4a pilus biogenesis protein PilY1 -
  PCP34_RS00815 (PCP34_00815) pilX 176511..177098 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  PCP34_RS00820 (PCP34_00820) pilW 177095..177919 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP34_RS00825 (PCP34_00825) pilV 177916..178473 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP34_RS00830 (PCP34_00830) - 178464..178970 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP34_RS00835 (PCP34_00835) - 179076..179585 (-) 510 WP_003161431.1 GspH/FimT family pseudopilin -
  PCP34_RS00840 (PCP34_00840) thiO 179720..180814 (+) 1095 WP_023518092.1 glycine oxidase ThiO -
  PCP34_RS00845 (PCP34_00845) pilR 180860..182197 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=771669 PCP34_RS00825 WP_003119423.1 177916..178473(-) (pilV) [Pseudomonas aeruginosa strain 20]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=771669 PCP34_RS00825 WP_003119423.1 177916..178473(-) (pilV) [Pseudomonas aeruginosa strain 20]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995