Detailed information NTG0771613

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQ971_RS21385
• Genome accession: NZ_CP127252
• Coordinates: 4362762..4363754 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C41
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4357762..4368754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ971_RS21360 (QQ971_21365)	ygbN	4358417..4359781 (+)	1365	WP_000104439.1	GntP family transporter	-
QQ971_RS21365 (QQ971_21370)	-	4359820..4360056 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QQ971_RS21370 (QQ971_21375)	-	4360067..4361494 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QQ971_RS21375 (QQ971_21380)	-	4361494..4362087 (-)	594	WP_286004736.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QQ971_RS21380 (QQ971_21385)	-	4362234..4362641 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
QQ971_RS21385 (QQ971_21390)	rpoS	4362762..4363754 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QQ971_RS21390 (QQ971_21395)	nlpD	4363817..4364911 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QQ971_RS21395 (QQ971_21400)	pcm	4365096..4365722 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QQ971_RS21400 (QQ971_21405)	surE	4365716..4366477 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QQ971_RS21405 (QQ971_21410)	truD	4366458..4367507 (-)	1050	WP_001583842.1	tRNA pseudouridine(13) synthase TruD	-
QQ971_RS21410 (QQ971_21415)	ispF	4367504..4367983 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQ971_RS21415 (QQ971_21420)	ispD	4367983..4368693 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=771613 QQ971_RS21385 WP_000081550.1 4362762..4363754(-) (rpoS) [Escherichia coli strain C41]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=771613 QQ971_RS21385 WP_000081550.1 4362762..4363754(-) (rpoS) [Escherichia coli strain C41]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715