Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQ971_RS11755 Genome accession   NZ_CP127252
Coordinates   2433163..2433792 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain C41     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2428163..2438792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ971_RS11735 (QQ971_11735) ycbZ 2428552..2430312 (-) 1761 WP_087892829.1 Lon protease family protein -
  QQ971_RS11740 (QQ971_11740) matP 2430498..2430950 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QQ971_RS11745 (QQ971_11745) ompA 2431026..2432078 (-) 1053 WP_001307702.1 porin OmpA -
  QQ971_RS11750 (QQ971_11750) sulA 2432435..2432944 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QQ971_RS11755 (QQ971_11755) sxy/tfoX 2433163..2433792 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQ971_RS11760 (QQ971_11760) yccS 2433755..2435917 (-) 2163 WP_000875023.1 YccS family putative transporter -
  QQ971_RS11765 (QQ971_11765) yccF 2435927..2436373 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QQ971_RS11770 (QQ971_11770) helD 2436496..2438550 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=771589 QQ971_RS11755 WP_000839153.1 2433163..2433792(+) (sxy/tfoX) [Escherichia coli strain C41]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=771589 QQ971_RS11755 WP_000839153.1 2433163..2433792(+) (sxy/tfoX) [Escherichia coli strain C41]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1