Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP60_RS21565 Genome accession   NZ_CP115296
Coordinates   4690100..4690657 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain 188     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4685100..4695657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP60_RS21550 (PCP60_21550) pilY1 4685192..4688683 (-) 3492 WP_023114843.1 type 4a pilus biogenesis protein PilY1 -
  PCP60_RS21555 (PCP60_21555) pilX 4688695..4689282 (-) 588 WP_023114842.1 type 4a pilus minor pilin PilX -
  PCP60_RS21560 (PCP60_21560) pilW 4689279..4690103 (-) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  PCP60_RS21565 (PCP60_21565) pilV 4690100..4690657 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PCP60_RS21570 (PCP60_21570) - 4690648..4691154 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP60_RS21575 (PCP60_21575) - 4691260..4691769 (-) 510 WP_017002065.1 GspH/FimT family pseudopilin -
  PCP60_RS21580 (PCP60_21580) thiO 4691904..4692998 (+) 1095 WP_023114840.1 glycine oxidase ThiO -
  PCP60_RS21585 (PCP60_21585) pilR 4693044..4694381 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=771587 PCP60_RS21565 WP_003094697.1 4690100..4690657(-) (pilV) [Pseudomonas aeruginosa strain 188]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=771587 PCP60_RS21565 WP_003094697.1 4690100..4690657(-) (pilV) [Pseudomonas aeruginosa strain 188]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978