Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QQ971_RS08595 Genome accession   NZ_CP127252
Coordinates   1801605..1802210 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain C41     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1796605..1807210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ971_RS08565 (QQ971_08565) rsmS 1797317..1797481 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  QQ971_RS08570 (QQ971_08570) priC 1797495..1798022 (-) 528 WP_089625076.1 primosomal replication protein N'' -
  QQ971_RS08575 (QQ971_08575) ybaN 1798092..1798460 (+) 369 WP_089625077.1 DUF454 family protein -
  QQ971_RS08580 (QQ971_08580) apt 1798622..1799173 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QQ971_RS08585 (QQ971_08585) dnaX 1799292..1801223 (+) 1932 WP_089625078.1 DNA polymerase III subunit gamma/tau -
  QQ971_RS08590 (QQ971_08590) ybaB 1801276..1801605 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QQ971_RS08595 (QQ971_08595) recR 1801605..1802210 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QQ971_RS08600 (QQ971_08600) htpG 1802320..1804194 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  QQ971_RS08605 (QQ971_08605) adk 1804375..1805019 (+) 645 WP_001220233.1 adenylate kinase -
  QQ971_RS08610 (QQ971_08610) hemH 1805151..1806113 (+) 963 WP_001250088.1 ferrochelatase -
  QQ971_RS08615 (QQ971_08615) aes 1806110..1807069 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=771582 QQ971_RS08595 WP_001195025.1 1801605..1802210(+) (recR) [Escherichia coli strain C41]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=771582 QQ971_RS08595 WP_001195025.1 1801605..1802210(+) (recR) [Escherichia coli strain C41]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTATGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443