Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCP60_RS05890 Genome accession   NZ_CP115296
Coordinates   1312563..1313198 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 188     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1307563..1318198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP60_RS05860 (PCP60_05860) murB 1308661..1309680 (-) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -
  PCP60_RS05865 (PCP60_05865) - 1309677..1310141 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  PCP60_RS05870 (PCP60_05870) kdsB 1310141..1310905 (-) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCP60_RS05875 (PCP60_05875) - 1310905..1311090 (-) 186 WP_003091157.1 Trm112 family protein -
  PCP60_RS05880 (PCP60_05880) lpxK 1311128..1312126 (-) 999 WP_023114520.1 tetraacyldisaccharide 4'-kinase -
  PCP60_RS05885 (PCP60_05885) - 1312126..1312566 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  PCP60_RS05890 (PCP60_05890) exbB 1312563..1313198 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCP60_RS05895 (PCP60_05895) comA 1313271..1315496 (-) 2226 WP_019682131.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCP60_RS05900 (PCP60_05900) - 1315627..1316160 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PCP60_RS05905 (PCP60_05905) - 1316248..1317492 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=771567 PCP60_RS05890 WP_003091163.1 1312563..1313198(-) (exbB) [Pseudomonas aeruginosa strain 188]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=771567 PCP60_RS05890 WP_003091163.1 1312563..1313198(-) (exbB) [Pseudomonas aeruginosa strain 188]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGTGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81