Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP28_RS22800 Genome accession   NZ_CP115293
Coordinates   4448567..4449124 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain 382     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4443567..4454124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP28_RS22780 (PCP28_22760) pilR 4444843..4446180 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP28_RS22785 (PCP28_22765) thiO 4446226..4447320 (-) 1095 WP_023114840.1 glycine oxidase ThiO -
  PCP28_RS22790 (PCP28_22770) - 4447455..4447964 (+) 510 WP_017002065.1 GspH/FimT family pseudopilin -
  PCP28_RS22795 (PCP28_22775) - 4448070..4448576 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP28_RS22800 (PCP28_22780) pilV 4448567..4449124 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PCP28_RS22805 (PCP28_22785) pilW 4449121..4449945 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  PCP28_RS22810 (PCP28_22790) pilX 4449942..4450529 (+) 588 WP_023114842.1 type 4a pilus minor pilin PilX -
  PCP28_RS22815 (PCP28_22795) pilY1 4450541..4454032 (+) 3492 WP_023114843.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=771482 PCP28_RS22800 WP_003094697.1 4448567..4449124(+) (pilV) [Pseudomonas aeruginosa strain 382]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=771482 PCP28_RS22800 WP_003094697.1 4448567..4449124(+) (pilV) [Pseudomonas aeruginosa strain 382]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978